Saturday Night Synthesis: Norethisterone

Tonight, it’s a ladies’ night.

Hello and welcome to another episode of SNS which is likely to be appreciated by women and the Chinese government: once again, we talk about birth control through oral contraception, as we synthesize Norethisterone, which was the first progestin ever made. Despite being an old molecule (its synthesis dates back to fifties), Norethisterone is still present in both combined and progestin only pills. In particular, it remains the most common progestin in biphasic and triphasic combination tablets. Luckily, to state the obvious, because it’s a pretty old drug, cheap, generic preparations are now available and this is news bearing in mind those poor areas where birth control is a key issue.

Contraception isn’t the sole clinical use of progestins: combined regimens, for instance, play a key role in hormone replacement therapy, aimed at relieving menopausal symptoms such as fractures, acceleration of bone loss, lipid changes with atherosclerotic cardiovascular disease. However, estrogens may even worsen cardiovascular issues and this explains why regimens must be suspended for a while and prolonged treatments can’t be adopted. Progestins, on their own, stimulate lipoprotein lipase activity and fat deposition, increase basal insulin levels and promote glycogen storage. There is also a limited number of pathologies where progestins can be chosen in non-combined regimens: dysmenorrhoea, endometriosis and some bleeding disorders. In these cases, the regimen is the same followed for contraception. Still, a problem with progestin only pills is that, sometimes, it can take too long for the cycle to regain its normal timing.

The main reason why I chose this synthesis isn’t, as you might have guessed, because, with the approaching New Year’s Eve’s crazy and wild parties, it’s always better to remind the importance of contraception to avoid beginning the year with unexpected surprises. I chose this synthesis (to be carried out listening to Kool and the Gang's “Ladies’ Night”) almost entirely because of its fantastic, initial reaction: a Birch reduction. I have often come across reactions whose ultimate aim is to yield an aromatic structure, therefore, from my own point of view, this one stands out at a beautiful way of getting rid of tedious aromaticity. You take a close derivative of estradiol and treat it with lithium, liquid ammonia and ethanol. And the mechanism looks brilliant and surprisingly easy to understand.
Then a second, enjoyable, name reaction (a gay-friendly Oppenauer oxidation) is performed, in order to oxidize the C17 hydroxyl. Potassium ethyne introduces the ethynide group in alpha to C17. Needless to say, the unconjugated diene is rather easy to modify, so, hydrogen bromide is the final touch to yield Norethisterone.
Beautiful, isn’t it?


Saturday Night Synthesis: Naproxen

Tonight, I give you a nice present. A second-hand one…

Hello and welcome to the Christmas special episode of SNS! Unlike last year, when Christmas time was the time of the year when I used to begin studying for the approaching exams in January and, therefore, I wasn’t in the mood for a Christmas show, this year I am fully enjoying the Christmas spirit, because the lab closed yesterday and I only have a couple of great articles to read and, maybe, discuss here. So, I’ve decided to do things by the book: for a perfect Christmas special, you need, first of all, to create the right atmosphere. That’s why you should do like me and illegally download…I mean, legally buy from iTunes John Lennon’s “Happy Xmas and listen to it while synthesizing a lovely bit of Naproxen to symptomatically treat that annoying inflammation that threatens to ruin your Christmas holidays, with this pretty strong, nonselective COX inhibitor.
Once you’ve chosen the right music, you turn to the decorations: the tree, the snow, the colourful lights, etc. To sum up, everything must look homely, warm and reassuring.
Then, you need a good story for when you sit by the fireplace, smoking your pipe. The story I want to tell you took place a couple of years ago, when, instead of blogging, I was a rather active member of the Chemical Forums community. So active, that I even joined Mitch’s crew as a moderator of a couple of sub-forums. I discovered that web-site like most of the people, I presume: I found a problem of analytical chemistry I couldn’t, for the life of, solve and, after almost a week of frustrating, unfruitful attempts, I tried the internet and that’s how I came across Chemical Forums’ Analytical Chemistry Forum. Not only did I find the answer to my, with hindsight, banal problem, but I also enjoyed the place so much that I became a regular and active member. I reckoned my life changed radically and today I proudly look back at that day as a crucial turning point for my life, a moment when my perspective widened suddenly and dramatically: from Italy to the World. Blogging, which I’ve now become addicted to (despite my currently decreased posting activity), came as a natural consequence, but there wouldn’t have been any half-decent blog without Chemical Forums.

By the way, after this touching remembrance, which might have disgusted the toughest and most cynical of you, it’s time to explain the link between that moment of my life and tonight’s Christmas-related post.
My membership wasn’t limited to helping high school students only:  every so often I had doubts too and, so, I looked for answers there. One of these questions had to do with the synthesis of Naproxen: my professor was very keen on describing its molecular action and stereochemistry, but, when he turned to the synthesis, he had to admit he hadn’t got a clue on the detailed mechanism of the most important and interesting step, the Willgerodt reaction: he didn’t expect us, pharmaceutical chemists, to work it out but he’d have appreciated if we had at least tried. Fortunately, two users, including Chemical Forums’ supremo Mitch, kindly helped me and together, although I simply drew the final pathway deriving it from their hints and hypotheses, reached a plausible conclusion.
As it turned out, my professor was so impressed with my go that I printed it out and is currently showing it during lectures and perhaps now wants students to know it by heart for the exam. Me? Well, that extra bit resulted in me being awarded the highest mark (a whopping 30 cum laude). Something unprecedented, he said.

Tonight, to celebrate Christmas, I want to share this present with you. So, here is the complete synthesis of Naproxen, as I first saw it, and I’m pretty sure you’ll find it’s not that cool.
You need methoxynaphthalene to react with acetyl chloride in such an easy-to-occur reaction it doesn’t even need a catalyser. Then, morphiline is added to the yielded intermediate in sulphur and something magical happens. You can imagine how curious I got when I saw the reagent and a pretty modified product with that arrow in between and heard even my professor ignored the mechanism of this name reaction. Well, it’s time for you to see my present, although it’s not Christmas day yet: this is what we came up with.
The synthesis of Naproxen continues with an acid added to yield the carboxylic acid, which is quickly protected by making its derivative ester. Interestingly, Naproxen is the sole NSAID marketed as single enantiomer (namely the S form). To actually create the stereogenic centre, you need to introduce a methyl: for this task, a mixture of methyl iodide and sodium hydride is employed. Finally, you carry out a banal fractional crystallization using cinchonidine as the base to yield the two diastereoisomers.

I wish you a merry Xmas: normal service will be resumed on December 26 and next episode of SNS will be online next Saturday as usual. Take care.

Seeya!


Saturday Night Synthesis: Ampicillin

Tonight, I try to refresh an old classic.

Hello and welcome! Generally, I decide during the week what synthesis could be the most appropriate for this weekly show. This week, though, I was so busy, not only in the lab, that Thursday came and, terrifyingly, I had no idea about what to synthesize today. I had to come up with something, anything, to keep you happy and satisfied, so, during the sole, proper break I managed to take in between an MTT assay and a series of treatments with aphidicolin and camptothecin, I set to complete this task, desperately looking for a juicy synthesis. Fortunately, I realised that in these two years I had never given the deserved attention to what I feel confident to call a masterpiece: the total synthesis of 6-Aminopenicillanic acid by His Majesty, Professor John Sheehan. This was the very first total synthesis I’ve ever come across and, to make this moment even more touching, I still remember the comment my professor felt the need to make, when explaining what “total synthesis” means. He said, plainly, that total syntheses are a something organic chemists use to show off how good they are and, I guess, to impress women at congresses. The less the steps required, the bigger the…manhood.

Anyhow, this really is an impressive piece of work. And it comes from 1957. So, while Ghana was becoming the first African colony to gain independence, a couple of Soviet shuttles were launched in the space, Albert Camus was awarded something in Sweden and Humphrey Bogart died, a man was thinking that penicillin-making was kind of boring and, perhaps, he could live it up, showing the world you could yield these molecules in your lab, if you don’t know what to do on a Saturday night, listening to, for example, Albinoni’s Adagio in G minor.

I have to admit, I am not a penicillin-enthusiast, as I don’t like their pharmacology very much. Ampicillin is an acid-stable, extended-spectrum penicillin. It’s orally administered to treat urinary and respiratory tract infections and otitis, as it is remarkably effective against resistant pneumococci. Intravenously, on the other hand, this drug is a reliable weapon against anaerobes, enterococci, E. Coli and many more. This molecule is a classic too, as its use dates back to 1961 but it still hasn’t lost its touch. What’s more, it’s well-known among molecular biologists too, isn’t it, lads?

I know, it all sounds like one of those sepia-coloured frescos from your grandpa’s youth: the sort of thing he is so keen on telling you about whenever you meet on Christmas holidays. However, not only is this, according to what I’ve just said, the appropriate circumstance, but this very synthesis is also an impossibly beautiful showcase of hardcore, total synthesis, full of soul and passion.

Sheehan begins his synthesis with a reaction between a protected formylglycine and mercaptovaline. In sodium acetate, the carbonyl binds to the thiol and this yields the ring on the right of 6-APA. The carboxyl group is protected with diazomethane and, at this point, the protections on formylglycine are removed using hydrazine and HCl. However, this reactions takes off the amino group, so, chlorotriphenylmethane has to be added. Finally, DCC triggers the auto-condensation and the protecting group are removed.
Now, having beautifully yielded the basic structure, you can easily use this a template for a wide spectrum of syntheses of penicillins. Given that Ampicillin is not that bad, after all, we go on, protecting the amine and activating the carboxyl, so that, as an anhydride, it quickly reacts with our beloved 6-APA. For the grand finale, hydrogen is chosen to take out from the picture what is there only to protect functional groups in a reaction predictably catalysed by precious platinum.
Once upon a time, there was a great chemist who wondered about penicillin…


Saturday Night Synthesis: Ethinylestradiol

Tonight, a genuinely exciting, soft-core synthesis.

Good evening and welcome to an X-rated episode of Saturday Night Synthesis. Before we kick things off, it’s my responsibility to warn you that this post contains explicit contents and, so, you cannot read it if you’re under 18. (I guess this introduction will make this one of the most read posts ever…).

Ok, having made absolutely clear that this synthesis is for adults only, it is time to go on and, for a start, play the song that I reckon to be the most appropriate for tonight. I looked back at the Sixties and found a hugely popular tune, which, amazingly, it is still considered somehow scandalous: “Je t'aime... moi non plus", written by Serge Gainsbourg and sung (well, not exactly: perhaps I should say whispered) by sexy and intriguing Jane Birkin. For the youngest readers I shall explain this song was so scandalous at the time it was released that it was banned from radios in many Western countries (including Italy and the UK) and people in the Vatican felt the need to publicly state it was immoral and vulgar and many other things I don’t bother reading.

I also believe the ideal place for this synthesis is obviously a lab, but a dim, poorly lit one, with exotic perfumes where lots of champagne-drinking chemists (men and women, of course) are promiscuously flirting while synthesising ethinylestradiol. If you’re a man and don’t have a normal sexual life (and that’s likely to be true if you spend your Saturday nights reading what I write), you’ll be probably staring at the monitor with a weird, confused expression, wondering why, in the name of God, this drug should evoke soft-core film atmospheres or a song about sex without love is the right one for the job in hand. You see, without ethinylestradiol, which is obviously a synthetic derivative of estradiol, everyone would probably have less sex, because this (at this point I should say) fantastic molecule is the most common active ingredient in oral contraceptives. In fact, I hope every woman reading this immediately understood the theme of the post just from the title and first sentence. I REALLY hope so.

There are two types of approaches towards hormonal, oral contraception: estrogens plus progestins or progestins on their own. When it comes to regimens, you could be addressed by your doctor to a monophasic (constant dosage of during menstrual cycle), biphasic or triphasic (dosage of one or both changed once or twice during cycle) form of contraception. Basically, contraception is the result of a selective inhibition of pituitary function, which eventually inhibit ovulation. Secondary to that, there are other changes which affect cervical mucous, uterine endometrium, motility and secretions of the tubes.

If a physician prescribes estrogens and progestins, the odds are that what you’ll get at the chemist’s is a tablet where the estrogenic part is played by ethinylestradiol. That’s because this semi-synthetic derivative was designed to solve an annoying issue of estradiol: in a nutshell, the ethinyl function isn’t there just for show, but it is actually a clever solution to the quick inactivation of estradiol operated by liver enzyme. As a result, the estrogen is more active even at much lower doses.

Now, before all the chemists give up working and begin a Caligula-film-style orgy, it’s better to stop talking pharmacologically and sex you up with this exiting synthesis. Which starts from dehydroepiandrostenedione acetate being deprotected with potassium hydroxide and then oxidized to a carbonyl in C3. Adding bromine you’ll halogenate in the alpha position the C2. This step is only aimed at yielding an excellent substrate for the following dehydrohalogenation, which yields an additional double bond. So far, it’s all nice and smooth: nothing particularly exciting, I admit. Luckily, things get more advanced for this point on.
The C17 carbonyl is protected as a ketal and now it’s time to turn the ring-A into an aromatic one: this is accomplished using lithium and biphenyl (aka lemonene) in THF. Lithium provides electrons (stabilized in this solvent by the biphenyl), yielding a dianion that evolves through losing a methyl carbanion, stabilized in turn by lithium cations. God, this is so hot!
When the ketal is removed, you end up with estrone. This estrogen isn’t what we were looking for, so, we add acetylene and sodium amide, with this final step unsurprisingly taking place in liquid ammonia.
Wow, I need a cigarette now.


Saturday Night Synthesis: AZT

Tonight, it’s time to show off your red ribbons.

Good evening and welcome to a, predictably, World AIDS Day’s based episode of Saturday Night Synthesis. Judging by the incredible number of red ribbons that have popped up all over the place (TV programmes, websites, newspapers, etc.), it’s almost impossible not to notice that, as every year, today we should all stop and spend a little bit of our time thinking about this terrible disease called AIDS. Honestly, I’ve never particularly liked this sort of one-day-only events, because they sound like: “Ok, let’s talk about it for a couple of hours, saying banal things and, perhaps, inviting someone suffering from it to a TV show (to explain AIDS isn’t transmitted like influenza or leprosy). Then we’ll all walk home feeling good because we nodded our head in approval for a long time and won’t think about it for the next 365 days.” That’s incredibly selfish, pointless and stupid, especially when it comes to AIDS because, unlike, say, malaria, it’s not just about charity to certain countries. AIDS is a constant threat everywhere: from the poorest African countries to the richest and most exclusive boulevards in L.A., from the roughest streets of Eastern Europe to the (apparently) happiest and most trouble-free families in Northern Europe.
So, frankly, a single day isn’t enough, but it’s nevertheless important to have such events to remember that, although science is making slow but constant progresses in the treatment of this disease, it’s ultimately up to us to avoid it, taking few, simple precautions. In the rich, Western World, people still die from AIDS and 2 millions are estimated to be living with HIV/AIDS this year. So, please, don’t come up with old the-Church-is-responsible-because-don’t-allow-catholics-to-use-condoms refrain, which would sound appropriate if talking about other nations: many people (especially straight ones) aren’t aware of how dangerous AIDS still is and tend to underestimate the risk, after the 1990s shock.
The key message, to highlight endlessly, is that our habits remain the most effective anti-retroviral medication to date for what is a constant threat.
Given the theme of the day, here we are to present the synthesis of the very first inhibitor of HIV reverse transcriptase to be clinically employed in the treatment of HIV infections: AZT. Being the first member of a now quite large family of drugs, we know a lot about its role even as a single antiretroviral agent, although nowadays a standard regimen features more than one nucleoside inhibitor (plus non-nucleoside and protease inhibitors, given the high rate of resistance).
AZT stands for azidothymidine and the name, together with a brief glance at its structure, explains how this drug and its congeners work: HIV reverse transcriptase is a key enzyme  for any retro-virus, such as lentiviruses HIV-1 and –2. This family, in fact, encompasses viruses with a single-stranded, diploid (two identical copies are in the virion), RNA genome, which has to be transcribed into DNA by the said enzyme. So, reverse transcriptase is fundamental for the replication of the viral genome, because the following, key event of the infection is the integration of the newly (retro)transcribed viral DNA into the host’s DNA: if this doesn’t occur, the virion won’t be replicated. Otherwise, when the host duplicates its genome, the viral one gets duplicate as well. When the host’s RNA polymerase transcribes, you’ll yield viral proteins too. Actually, the translation of the pro-virus (viral RNA turned into a little longer, correspondent DNA) results in a so-called (immature) poly-protein, which undergoes maturation through the action of a viral protease.

AZT (also known as Zidovudine) can impair the activity of reverse transcriptase through two mechanisms, once phosphorylated by a kinase: it can, in fact, either physically block the access of normal nucleotides to the active site of RT or be incorporated in the growing strand blocking the process because of the lack of a 3’ OH.
Things aren’t all that good once you turn at the adverse effect. Predictably, as any other pioneering drug, AZT easily causes a myriad of nasty complications to patients whose immune system is already dramatically compromised. Most common toxicity is myelosuppresion, which in turn leads to anaemia and neutropenia. That’s one of the reasons many people firmly believe these drugs to be even worse than HIV infection itself. Although I disagree, I can see their point: the use of these drugs implicates a series of severe adverse effects which would be incredibly hard to cope with for a perfectly healthy person. Their impact on individuals with a progressive inability to respond even to the mildest of the diseases can be intolerable. In a nutshell, the cure is worse than the illness.

The synthesis of Zidovudine is a pretty quick one: unsurprisingly, you start from deoxythymidine, with a protected 5’, primary, hydroxyl; the remaining, unprotected, secondary, 3’-OH reacts with methanesulfonyl chloride, to yield an excellent leaving group. Potassium phthalimide removes a proton from the amine, which in turn leads to an oxygen binding to the 3’, beta position of the sugar. This intermediate is then opened by adding sodium azide, which binds the 3’ position, obviously attacking the structure in alpha.
The synthesis is over once acetic acid has removed the protecting group from the 5’-OH, yielding a beautifully faked nucleotide: azidothymidine.
To be continued…


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